I can only think of Metroid, Trace Memory and some fashion/cooking games.
Does Nintendo have another game with a female lead? I tried to look it up, but I had no luck.
By Nintendo games, I mean games that are published and/or developed by Nintendo.
I'm just curious because they have a lot of games...it seems strange only one action game stars a girl. Ox
Edit:
I found this list if it helps. I don't know if it's 100% accurate, but I'm assuming it is?
http://nintendo.wikia.com/wiki/List_of_Nintendo_games
Titles people have mentioned so far that have been developed and/or published by Nintendo:
Female Protagonist:
- Metroid (All titles)
- Trace Memory & Another Code: R - A Journey into Lost Memories
- Super Princess Peach
- Panel De Pon
- Drill Dozer
- Boyonetta 2
- Mischief Makers (Only Published by Nintendo of America, may not count)
Female Optional/Shared Role Protagonist:
- Pokemon Crystal up through all main Pokemon titles
- Fire Emblem 7, 8, & 10
- Sin & Punishment: Star Successor
- Magical Starsign
- Donkey Kong Country 2 & 3