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so i think that suikoden might of taken places when true runes were seperated
I...don't understand. Are you saying that perhaps the future Suikos (not necessarily Suiko V) may be based on separating the True Runes?
IMO, I believe that if they were to have such a scene, they would only render it as a flashback or something along those lines, because as said in Suiko, the separating of the True Runes (I'm speaking from the POV that you mean ALL the True Runes and not just the True Rune of Beginning) was the beginning of the world. The flashback will most probably be of that scene via a True Rune.
However, it is possible that they may plan in future to go back to IS 2, when Aronia was founded. This would, of course, perhaps mean that we would get a closer glimpse of the founding of Harmonia when Hikusaak overthrows Aronia to form Harmonia.
However, I'm more to believing that they will, in the end (which is around Suiko VII, if I'm not wrong), group all the True Rune bearers once again to fight an ultimate enemy....maybe Yuber? Or Leknaat? No one knows...