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I think it depends on your definition of "pretty boy". Because I tend to think half the world of anime/games is full of pretty boys but yours seems to narrow down to long haired, delicate looking boys.

Vincent Valentine, from Final Fantasy 7, had that sort of relationship with Lu (can't spell her whole name). Cloud Strife, from the same game, had Tifa and Aeirth. Sora from Kingdom Hearts has Kairi. Yuki from Fruits Baskets. There are heavy hints between him and Tohru (the main female). Yohji from Weiss Kruez had that girl... whatever her name was. I consider all those guys pretty even if they're not delicate looking.

Also a lot of times the pretty boy character doubles as the aloof character, the hard to approach character. Or he might be interested in something else completely and not care about girls or guys. I think a lot of people see a pretty boy and start looking for someone to slash him with too, like Duo or Kurama.

That does make sence. (I am going by my freinds veiw of a "pretty-boy)
Those slashing fangirls sometimes make charecters look really bad. It begins to piss me off. /:

(Not that all slash is completly screwed, I am quite guilty aswell.)

I do not mean slashes though, I mean in the acctuall animes. I thought about Vincecnt, but decided he wasn't what my freind would call "Pretty."

Well, see, it has to be like that to avoid the raging fangirls from hating the female characters even more.
See, if the pretty straight boys were taken and in a relationship, the female fans might totally ignore the female characters. And that would not be good.

(Notice I said the female fans, not male and female. I'm not sure if guys are like this.)

Animes don't really do it often either. Unless you mean BL animes. Most of the time there does seem to be something suggestive, yes. But you've gotta remember that a lot of it the is interpretation of the fans. The writer isn't always necessarily thinking "oh, I'm going to make that pretty boy really hinty and gay-ish". His or her intentions might be completely different.

And like I said, it all has to do with how your define pretty. We differ in definitions, so it effects our consideration of this topic.

Aerine Lillet Clamp tends to piss me off aswell by doing that. D'=

LadyNox I understand that, but they are usually either gay or single. (I know tihs is difficult to do without a deffinition of "pretty", I'm sorry for that.) I have never seen the "Delicate" looking guy with an exceptably equal girl.

Ace of Shadows...I love you. <3 I myself am not to fond of the seme/uke relationships, in both hetro and homo pairings. I like it when they two share the same dominance. Besides, most of the times the "ukes" are so.... girl-esque, they should just be girls.

We probably all know that the majority of them are.^_^

I recently have seen this game my friend owns, with really beautiful 'Final Fantasy' kind of graphics(Think the Advent children movie if you haven't seen the game yet.) and...there is actually this one main character, for example, whom you can tell STRAIGHT OFF that he is gay! He is soo adorable though!^_^

But, with all honesty, when gay guys in animes or games have 'wisps'(If you know what I mean...), I personally perfer them when they talk in Japanese instead of English. Because, when you hear too much of that voice in a series...well, I at least feel bored and tired of hearing it. ^_^U

A simple answer to your question? Yes. Yes, they are gay. And, if they are not gay now, they will be gay within five years. You might not know it. They might not tell you, but it happens. Sorry... emotion_sweatdrop