Not only were Alice's five senses enhanced, but she was also implanted with a series of micro computers to enhance her learning capabilities. Her bone structure was coated in a nearly indestructible alloy, and certain emotions, namely fear, empathy and compassion, were diluted to make her a better soldier. Certain body parts were removed and replaced with completely robotic replicas, such as her eyes and both her arms and legs, as well as many organs; she has an inorganic heart and parts of her brain have been modified.
The artificial heart can pump a collection of liquids to various parts of her body, each serving a different purpose. Oil, recycled hydraulic fluid, and blood all travel through a sophisticated circulatory system, blood going to the vitals in her midsection and to her brain, black hydraulic fluid going to her artificial limbs, and oil to lubricate her mechanical parts.
Because Alice can use oils from the food she eats as lubricant she doesn't require oil changes. ;O
One of the gene modifications done by BLOOM were major enhancements to her skin, including a rubberized covering over a collection of tiny poly-carbonate platelettes [the width of a few normal skin cells]. Each platelette attaches to the one next to it which could rearrange in rigidity to form a variety of textures and shapes. This allows her to lift and reform her skin for various uses.
For example, if under gun fire, the plates of her skin can move and rearrange to one side, and she could hold both arms up so the "skin" from either side could connect and form a shield leaving the mechanics of her arm underneath exposed behind the shield. They can also change to form bladed weapons, their edges sharpened to a tip no thicker than a few cells.
Alice's skin can also camouflage to her surroundings to make her nearly invisible against textured surfaces. Her synthetic hair can become clear by applying an electrical charge, which changes the crystalline structure to allow light to pass through.
Alice has the equivalent of a photographic memory; she can take pictures and videos with her eyes and save them as reviewable files. Data can also be fed across her vision, such as warnings about malfunctioning parts of her body, information on targets, and caller identification for when she is receiving phone calls. Like the lens of a camera, she can zoom in and out with her pupils and adjust focus as necessary.
Alice can obtain energy either by eating or through solar power, she is resistant to any form of intoxication and she can survive one week on solar power alone. When out of energy, she will save all new data to auxiliary file storage and shut down until manually connected to a power source via the plug on the back of her neck [extension chord included ;D].