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Demonstrate to me that a 'supernatural' thing can be considered 'natural' or real, and I gladly will accept it as a part of our reality.
I can’t, and that is the whole purpose of Methodological Naturalism, to limit science to only natural processes. It does not consider supernatural hypothesis’s because it is unable to directly observe or test them, making it impossible to study them. If they were able to, then these things would not be supernatural.
The annoying thing about the supernatural is that it can decide whatever it wants to be. If a god wants to make a rock so heavy that it can’t lift the rock, it can do just that. Then an instance later, it can decide to lift that same rock. It’s not bound by rules, logic, or laws, and thus is impossible for us to quantify.
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If you were to claim that the god of Catholicism were real, I'd have a set amount of questions that would need to be satisfied.
I agree, I would to, but the answers that can be provided will never satisfy what you or I want, because we would have to consider something we can’t observe or measure as evidence, and according to the rules set by Methodological Naturalism it’s not.
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Science imposes no limitations on itself.
Yes it does, several in fact. The scientific method is one such limit. However, I think you are misunderstanding by what I mean by limit. I don’t mean limit as in a ‘lack of ability’, but rather as a ‘control’.