Captain Talavar
The Drunken Jester
It might've been directed by Henry Selick, but it's a Tim Burton creation, so I think it counts. The whole title is "Tim Burton's: The Nightmare Before Christmas"
And if you can't be swayed then I change my answer to Edward Scissorhands.
It's not a Tim Burton creation. Tim Burton wrote a little poem and had a hand in design in the early stages, but Selick was the one who worked for two years in the studio moving those puppets frame-by-frame to get the shots, and Selick worked with Danny Elfman to get the story right for the music. It's called "Tim Burton's"
The Nightmare Before Christmas because he produced it, and his name was a big deal. Disney was worried that it would be a flop (and it kind of was at first), hence why they didn't even release it under the Disney banner at the time. They figured that calling it "Tim Burton's" it would be a marketing push. Studios still do this all the time. The new movie
Mama coming out this Friday is often marketed as "from Guillermo del Toro" even though he's only the producer, and the director of the film (and of the short film it's based on) is actually Andres Muschietti. But his name doesn't have that "wow" factor or fan-favorite factor that GDT's name has, or Tim Burton's name has.
I've seen a lot of evidence that Tim Burton had a heavier hand in it than that.
Such as notebooks full of rough character designs and progression drawn by Burton, things like that. I've seen pictures of him in the studio with the puppets too, but I'd guess that those were just publicity shots anyhow.
I'm willing to say it's not 'his movie', but it's still his story and his design and etc etc.... That, in my opinion anyhow, makes it his creation, even if he didn't actually move the puppets or do the directing himself. And I've seen plenty of similar elements in the movies Selick didn't have a hand in, so I'm not willing to believe all of it is Selick's work.
Though, like I said, I can change my answer to Edward Scissorhands if you don't think of it as a Tim Burton movie.
I like Henry Selick too. I thought Coraline was awesome.