Ever heard of Alice in the Country of Hearts? It's a manga series. Pretty good art and take on the characters. I like all the characters. For your potential artistic pleasure my avatar wearing a queen of hearts inspired outfit: http://tektek.org/av/617795
Pandora Hearts is another Alice's Adventures in Wonderland/Through the Looking Glass inspired manga that I've enjoyed immensely, though I second the Alice in the Country of Hearts recommendation.
There's a teen book called Splintered (with a sequel called Unhinged) that is also directly Wonderland-related. The protagonist in the first book is a descendant of Alice who has to go to Wonderland to break a curse on her family. I haven't finished reading Splintered yet, but it's good so far.
My favorite iteration will always remain the original, I think. My favorite characters are the tea party trio - the Hatter, the March Hare, and the Dormouse. (Though I also like the Cheshire Cat, the White Rabbit, the Griffin, and...quite a few other characters, really.) ^_^;;